.. _sec-tutorials:

=========
Tutorials
=========

ONETOOL is a tool for family-based big data analyses.
It implements the properties of well-known existing family data analysis
tools and recently developed methods in a computationally efficient manners,
so is suitable for analyzing the vast amount of variant data availble from
sequencing family members, providing a rich choice of analysis methods for
big data from families.

In this tutorial, we provide a guided tour through the main features of
ONETOOL. You can read it in HTML or PDF versions.

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Input
-----

.. toctree::
    :maxdepth: 2

   Input <tutorials/2_input>
   Main Data Input Files <tutorials/2_input_file_main>
   Additinal Input Files <tutorials/2_input_file_misc>

----------------
InfoQC Ananlysis
----------------

.. toctree::
    :maxdepth: 2

   InfoQC Analaysis <tutorials/3_infoqc>

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Trait Ananlysis
---------------

.. toctree::
    :maxdepth: 2

   Trait Analaysis <tutorials/4_trait>

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Linkage Ananlysis
-----------------

.. toctree::
    :maxdepth: 2

   Linkage Analaysis <tutorials/5_linkage>

---------------------
Association Ananlysis
---------------------

.. toctree::
    :maxdepth: 2

   Association Analaysis <tutorials/6_association>