.. _sec-association:

Association analysis module provides many different family-based association tests 
between trait(s) and both single-variant (common variant) and gene-based (rare variant).


.. _asingle:

==============
Single variant
==============

Summary of single variant analyses available in ONETOOL:

.. image:: misc/assoc_1.JPG
   :scale: 100 %
   :align: center




.. _agene:

==========================
Gene-based (Rare variant)
==========================

Summary of gene-based (rare variant) analyses available in ONETOOL:

.. image:: misc/assoc_2.JPG
   :scale: 100 %
   :align: center



.. _agdosage:

================================
Dosage/genotype probability data
================================

ONETOOL can take the dosage and genotype probability files from several popular 
imputation tools available for population data.